PHATRDRAFT_50465 (Smc)Phaeodactylum tricornutum | Diatom Portal

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_50465	chr_30	(Smc)	141042	144116	+

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0221

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0127	0.23	1.1 59

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
RING		RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60...	cl17238	51.2924	4.23E-08	936 - 978	specific	238093
RING superfamily		RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60...	-	51.2924	4.23E-08	936 - 978	superfamily	266579
Smc		Chromosome segregation ATPases [Cell division and chromosome partitioning]	-	70.5136	1.38E-12	323 - 906	multi-dom	224117

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
25214		Not available	136128	261164	462197	Cre14.g625802.t1.1	AT1G55250.1	322360

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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