PHATRDRAFT_51933 nonphototropic hypocotyl 1 (PAS)Phaeodactylum tricornutum | Diatom Portal

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_51933	chr_8	nonphototropic hypocotyl 1 (PAS)	267978	268406	+

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0391

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0082	0.37	3.1 500

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
PAS superfamily		PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising...	-	48.0131	1.90E-08	19 - 112	superfamily	238075
PAS superfamily		PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising...	-	48.0131	1.90E-08	19 - 112	superfamily	238075

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
37198		Not available	199001	202247	53974	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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