PHATRDRAFT_5424 loc539270 protein (RRM_ABT1_like)
Phaeodactylum tricornutum

   

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_5424	chr_5	loc539270 protein (RRM_ABT1_like)	825755	826216	+

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0202

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0118	0.28	140 210

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
RRM_ABT1_like		RNA recognition motif found in activator of basal transcription 1 (ABT1) and similar proteins; This...	cl17169	153.132	2.93E-48	2 - 98	specific	240709
RRM_SF superfamily		RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (...	-	153.132	2.93E-48	2 - 98	superfamily	266524

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
34413		Not available	223935	188124	211403	Cre06.g264500.t1.2	AT3G56510.2	284998

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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