PHATRDRAFT_54310 chd gene family protein containinghelicaseand dna-binding domain (SNF2_N)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_54310 chr_5 chd gene family protein containinghelicaseand dna-binding domain (SNF2_N) 428981 432477 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0227

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0103
 0.38

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... cl17251 79.6888 1.26E-17 120 - 277 specific 238005
DEXDc superfamily DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... - 79.6888 1.26E-17 120 - 277 superfamily 266587
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 62.6404 8.76E-12 456 - 529 superfamily 238034
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 62.6404 8.76E-12 456 - 529 superfamily 238034
CHROMO Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids... cl17459 46.1031 1.08E-06 21 - 60 specific 237991
CHROMO superfamily Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids... - 46.1031 1.08E-06 21 - 60 superfamily 266700
SNF2_N SNF2 family N-terminal domain; This domain is found in proteins involved in a variety of processes... - 263.763 1.35E-83 104 - 399 multi-dom 249654
HDA2-3 Class II histone deacetylase complex subunits 2 and 3; This family of class II histone deacetylase... - 38.1056 0.00383727 351 - 518 multi-dom 256486

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
263816 Not available 156509 178554 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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