PHATRDRAFT_54326 ssl1 cg11115-pa (SSL1)Phaeodactylum tricornutum | Diatom Portal

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_54326	chr_5	ssl1 cg11115-pa (SSL1)	725605	726969	-

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0412

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0250	0.22	600 43000

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
vWFA superfamily		Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von...	-	216.918	2.74E-68	89 - 291	superfamily	260163
C1_4 superfamily		TFIIH C1-like domain; The carboxyl-terminal region of TFIIH is essential for transcription activity...	-	110.795	1.88E-29	316 - 413	superfamily	263066
SSL1		RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [...	-	266.478	1.93E-84	23 - 412	multi-dom	227480

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
33946		Not available	138895	296149	77336	Cre03.g179550.t1.1	AT1G05055.1	345458

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

Add comment

Log in to post comments