PHATRDRAFT_54577 deah (asp-glu-ala-his) box polypeptidepartial (HrpA)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_54577 chr_10 deah (asp-glu-ala-his) box polypeptidepartial (HrpA) 283881 286635 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0121

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0064
 0.31

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... cl17251 94.3264 2.77E-22 26 - 169 specific 238005
DEXDc superfamily DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... - 94.3264 2.77E-22 26 - 169 superfamily 266587
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 59.9441 1.12E-10 280 - 401 superfamily 238034
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 59.9441 1.12E-10 280 - 401 superfamily 238034
HA2 Helicase associated domain (HA2); This presumed domain is about 90 amino acid residues in length.... cl04503 104.607 2.08E-26 460 - 556 specific 252575
HA2 superfamily Helicase associated domain (HA2); This presumed domain is about 90 amino acid residues in length.... - 104.607 2.08E-26 460 - 556 superfamily 262181
OB_NTP_bind superfamily Oligonucleotide/oligosaccharide-binding (OB)-fold; This family is found towards the C-terminus of... - 60.7746 4.30E-11 617 - 723 superfamily 254381
OB_NTP_bind superfamily Oligonucleotide/oligosaccharide-binding (OB)-fold; This family is found towards the C-terminus of... - 60.7746 4.30E-11 617 - 723 superfamily 254381
HrpA HrpA-like helicases [DNA replication, recombination, and repair] - 507.243 5.63E-167 1 - 697 multi-dom 224557

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
12570 Not available 209561 318225 448382 Cre12.g492450.t1.2 AT1G58060.1 481054

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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