PHATRDRAFT_6025 hmg family member (hmg-) (HMGB-UBF_HMG-box)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_6025 chr_1 hmg family member (hmg-) (HMGB-UBF_HMG-box) 2064045 2064485 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0379

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins.... cl00082 48.393 7.25E-09 1 - 67 specific 238686
HMG-box superfamily High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and... - 48.393 7.25E-09 1 - 67 superfamily 260179
HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins.... cl00082 48.393 7.25E-09 1 - 67 specific 238686
HMG-box superfamily High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and... - 48.393 7.25E-09 1 - 67 superfamily 260179

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
36301 Not available 185939 184170 Not available Cre16.g672300.t1.2 Not available 288743

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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