PHATRDRAFT_9199 cytoplasmic ribosomal protein s13 (PTZ00072)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_9199 chr_1 cytoplasmic ribosomal protein s13 (PTZ00072) 607961 608416 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0151

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0098
 0.29

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Ribosomal_S15p_S13e Ribosomal protein S15 (prokaryotic)_S13 (eukaryotic) binds the central domain of 16S rRNA and is... cl00349 92.5662 5.25E-25 70 - 145 specific 238213
S15_NS1_EPRS_RNA-bind superfamily S15/NS1/EPRS_RNA-binding domain. This short domain consists of a helix-turn-helix structure, which... - 92.5662 5.25E-25 70 - 145 superfamily 260373
Ribosomal_S13_N superfamily Ribosomal S13/S15 N-terminal domain; This domain is found at the N-terminus of ribosomal S13 and... - 111.516 1.69E-32 1 - 60 superfamily 191937
Ribosomal_S13_N superfamily Ribosomal S13/S15 N-terminal domain; This domain is found at the N-terminus of ribosomal S13 and... - 111.516 1.69E-32 1 - 60 superfamily 191937
PTZ00072 40S ribosomal protein S13; Provisional - 285.79 1.03E-99 4 - 151 multi-dom 185427

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
26221 Not available 270068 300885 414120 Cre07.g331900.t1.2 AT4G00100.1 355091

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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