PHATRDRAFT_9929 putatative 28 kda protein (COG1094)
Phaeodactylum tricornutum

   

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_9929	chr_2	putatative 28 kda protein (COG1094)	166743	167605	-

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0137

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0215	0.22	2500 130000

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
KH		K homology RNA-binding domain; K homology RNA-binding domain.	cl17245	40.3564	2.01E-05	121 - 173	specific	197652
KH-I superfamily		K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide...	-	40.3564	2.01E-05	121 - 173	superfamily	266583
COG1094		Predicted RNA-binding protein (contains KH domains) [General function prediction only]	-	195.587	7.34E-63	16 - 196	multi-dom	224019

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
35041		Not available	227411	206037	313654	Cre12.g549700.t1.2	AT3G13230.1	359998

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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