10404 MscS
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
10404 chr_16a MscS 245154 247234 + MscS

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0124

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0026
 0.39

Most Highly Correlated Transcripts

bd1841

(bd1841) CAP10 superfamily
0.9715

bd415

(bd415) arom_aa_hydroxylase superfamily
0.9566

bd410

(bd410) HNHc
0.9503

bd1808

(bd1808) NA
0.9249

bd1941

(bd1941) NA
0.9208

6701

hypothetical protein
0.8939

bd1793

(bd1793) NA
0.8865

bd1786

(bd1786) GLTP superfamily
0.8748

11319

hypothetical protein
0.8587

bd884

(bd884) NA
0.8489

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
MS_channel superfamily Mechanosensitive ion channel; Two members of this protein family from M. jannaschii have been... - 86.4814 1.35E-19 312 - 500 superfamily 250229
MscS Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane] - 90.3649 2.84E-20 312 - 500 multi-dom 223740

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_44327 PHATRDRAFT_44327 169199 318996 54411 Not available AT4G00290.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0016020 -

GO:0016020

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC

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