13996 (AMT2) amt
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
13996 chr_2 (AMT2) amt 1429802 1431581 + amt

Synonyms

NCBI ID Ensembl Genomes exon ID
7446649 Thaps13996.1, Thaps13996.3, Thaps13996.2, Thaps13996.4

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0175

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0049
 0.45

Most Highly Correlated Transcripts

bd1893

(bd1893) NA
0.9254

bd463

(bd463) Aa_trans superfamily
0.8997

bd439

(bd439) POLBc_alpha
0.8982

bd718

(bd718) PRK10387
0.8761

bd950

(bd950) NA
0.8649

bd2073

(bd2073) psbB
0.8637

bd758

(bd758) NA
0.8579

bd1078

(bd1078) NA
0.8568

bd1154

(bd1154) tpt
0.8522

bd1645

(bd1645) tpt
0.8491

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
amt ammonium transporter; The Ammonium Transporter (Amt) Family (TC 2.A.49) All functionally... cl03012 366.208 3.28E-122 8 - 436 specific 233145
Ammonium_transp superfamily Ammonium Transporter Family; Ammonium Transporter Family. - 366.208 3.28E-122 8 - 436 superfamily 261545

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_54981 PHATRDRAFT_54981 212054 Not available 74037 Cre13.g569850.t1.2 AT3G24300.1 325850

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0006810 GO:0008519 GO:0016020 -

GO:0006810

transport

Details: 
The directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or pore.
GO Category: 
BP

GO:0008519

ammonium transmembrane transporter activity

Details: 
Catalysis of the transfer of ammonium from one side of a membrane to the other. Ammonium is the cation NH4+ which is formed from N2 by root-nodule bacteria in leguminous plants and is an excretory product in ammonotelic animals.
GO Category: 
MF

GO:0016020

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC

Add comment

Log in to post comments