15336 DUS_like_FMN
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
15336 chr_11a DUS_like_FMN 453413 455249 + DUS_like_FMN

Synonyms

NCBI ID Ensembl Genomes exon ID
7448322 Thaps15336.1, Thaps15336.4, Thaps15336.3, Thaps15336.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0219

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0147
 0.38

Most Highly Correlated Transcripts

bd1439

(bd1439) ycf35
0.8842

23096

hypothetical protein
0.8653

bd1807

(bd1807) RRS1 superfamily
0.8551

21802

hypothetical protein
0.8407

32744

VacB
0.8339

23897

hypothetical protein
0.8334

10533

hypothetical protein
0.8312

14890

Cupin_8 superfamily
0.8301

4071

hypothetical protein
0.8298

22355

hypothetical protein
0.8282

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the... cl17186 215.436 4.16E-66 91 - 327 specific 239200
TIM_phosphate_binding superfamily TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an... - 215.436 4.16E-66 91 - 327 superfamily 266538
Dus Dihydrouridine synthase (Dus); Members of this family catalyse the reduction of the 5,6-double bond... - 152.467 7.81E-42 91 - 385 multi-dom 250444

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_12384 PHATRDRAFT_12384 268632 299159 95311 Cre13.g592300.t1.2 AT3G49640.1 319688

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0008033 GO:0016491 GO:0050660 GO:0051341 -

GO:0008033

tRNA processing

Details: 
The process in which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group.
GO Category: 
BP

GO:0016491

oxidoreductase activity

Details: 
Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
GO Category: 
MF

GO:0050660

flavin adenine dinucleotide binding

Details: 
Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2.
GO Category: 
MF

GO:0051341

regulation of oxidoreductase activity

Details: 
Any process that modulates the frequency, rate or extent of oxidoreductase activity, the catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
GO Category: 
BP

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