1649 COG0790Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
1649	chr_1	COG0790	2077072	2079083	+	COG0790

Synonyms

NCBI ID	Ensembl Genomes exon ID
7447440	Thaps1649.4, Thaps1649.1, Thaps1649.2, Thaps1649.3

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0216

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0281	0.33	5600 4000

Most Highly Correlated Transcripts

3119 hypothetical protein 0.9229	6243 Macro superfamily 0.9168	bd392 (bd392) DEXDc 0.915	4876 hypothetical protein 0.9056	36669 TPT 0.9048	31829 CBS_like 0.9048
261400 NA 0.9046	262201 PP2Cc 0.9033	bd1777 (bd1777) NA 0.9023	4292 hypothetical protein 0.9016

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
COG0790		FOG: TPR repeat, SEL1 subfamily [General function prediction only]	-	65.8359	4.12E-12	160 - 346	multi-dom	223861

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_32976	PHATRDRAFT_32976	226165	178157	Not available	Not available	Not available	486146

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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