17935 DnaQ_like_exo superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
17935 chr_6 DnaQ_like_exo superfamily 743571 746624 - DnaQ_like_exo superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7443598 Thaps17935.1, Thaps17935.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0243

Most Highly Correlated Transcripts

264679

Syja_N
0.939

35929

(MAPKKK) S_TKc
0.9339

19126

(Tp_CCCH12) YTH1
0.9187

42543

2OG-FeII_Oxy_2
0.9178

30950

Glyco_hydro_47
0.917

15246

NhaP
0.9145

12500

SNF2_N
0.9138

11371

hypothetical protein
0.9136

261495

Peptidase_M36
0.9131

22666

hypothetical protein
0.9027

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
DnaQ_like_exo superfamily DnaQ-like (or DEDD) 3'-5' exonuclease domain superfamily; The DnaQ-like... - 257.911 1.96E-79 287 - 490 superfamily 263941
HRDC HRDC domain; The HRDC (Helicase and RNase D C-terminal) domain has a putative role in nucleic acid... cl02578 69.1168 3.85E-14 531 - 598 specific 249966
HRDC superfamily HRDC domain; The HRDC (Helicase and RNase D C-terminal) domain has a putative role in nucleic acid... - 69.1168 3.85E-14 531 - 598 superfamily 261358

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_22703 PHATRDRAFT_22703 178610 180581 419006 Cre12.g512250.t1.1 AT1G54440.1 553621

KEGG

KEGG description KEGG Pathway
RNA degradation map03018

GO Terms

GO:0003676 GO:0005622 GO:0008408 -

GO:0003676

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

GO:0005622

intracellular

Details: 
The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO Category: 
CC

GO:0008408

3'-5' exonuclease activity

Details: 
Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' end.
GO Category: 
MF

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