18624 Mpv17_PMP22
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
18624 chr_8 Mpv17_PMP22 234674 235715 + Mpv17_PMP22

Synonyms

NCBI ID Ensembl Genomes exon ID
7452430 Thaps18624.1, Thaps18624.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0417

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0228
 0.34

Most Highly Correlated Transcripts

bd1877

(bd1877) NA
0.9187

bd895

(bd895) NA
0.8658

bd1813

(bd1813) NA
0.8633

bd877

(bd877) NA
0.8501

bd738

(bd738) NA
0.8451

bd1801

(bd1801) NA
0.8425

bd1840

(bd1840) NA
0.8416

bd1946

(bd1946) NA
0.839

bd1802

(bd1802) NA
0.8363

bd409

(bd409) Snf7 superfamily
0.8286

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Mpv17_PMP22 superfamily Mpv17 / PMP22 family; The 22-kDa peroxisomal membrane protein (PMP22) is a major component of... - 61.0924 2.82E-12 233 - 295 superfamily 252388
Mpv17_PMP22 superfamily Mpv17 / PMP22 family; The 22-kDa peroxisomal membrane protein (PMP22) is a major component of... - 61.0924 2.82E-12 233 - 295 superfamily 252388

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_12262 PHATRDRAFT_12262 163053 Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Peroxisome map04146

GO Terms

GO:0016021 -

GO:0016021

integral component of membrane

Details: 
The component of a membrane consisting of gene products and protein complexes that have some part that penetrates at least one leaflet of the membrane bilayer. This component includes gene products that are buried in the bilayer with no exposure outside the bilayer.
GO Category: 
CC

Add comment

Log in to post comments