19141 PRK09267Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
19141	chr_6	PRK09267	993826	994845	-	PRK09267

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Thaps19141.2, Thaps19141.3, Thaps19141.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0202

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0008	0.44	0.00078 37000

Most Highly Correlated Transcripts

28635 hypothetical protein 1	4487 hypothetical protein 0.8566	8860 hypothetical protein 0.836	261271 CDP-OH_P_transf 0.8174	4858 hypothetical protein 0.8125	6692 hypothetical protein 0.8095
2150 hypothetical protein 0.8041	22213 (PFK2) PFK superfamily 0.8039	3038 hypothetical protein 0.8003	5270 Methyltransf_16 superfamily 0.8002

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
PRK09267		flavodoxin FldA; Validated	cl00438	218.546	4.97E-71	36 - 208	specific	236439
FMN_red superfamily		NADPH-dependent FMN reductase; NADPH-dependent FMN reductase.	-	218.546	4.97E-71	36 - 208	superfamily	260423

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_13706	PHATRDRAFT_13706	143625	294998	68288	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0005489 GO:0006118 GO:0010181 GO:0016491 -

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