21948 DUF179Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
21948	chr_3	DUF179	1892515	1893973	-	DUF179

Synonyms

NCBI ID	Ensembl Genomes exon ID
7452057	Thaps21948.2, Thaps21948.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0172

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0269	0.41	25000 54000

Most Highly Correlated Transcripts

24386 hypothetical protein 0.8731	3564 hypothetical protein 0.86	10856 hypothetical protein 0.8581	23618 RING 0.8539	10963 hypothetical protein 0.8538	4783 hypothetical protein 0.8514
263219 MFS_1 0.8502	2669 MmsB 0.8491	8038 hypothetical protein 0.8472	5038 DUF179 0.8457

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
DUF179		Uncharacterized ACR, COG1678; Uncharacterized ACR, COG1678.	cl00731	112.254	1.30E-29	209 - 373	specific	251425
DUF179 superfamily		Uncharacterized ACR, COG1678; Uncharacterized ACR, COG1678.	-	112.254	1.30E-29	209 - 373	superfamily	260593

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_48166	PHATRDRAFT_48166	261511	308977	Not available	Cre08.g377950.t1.2	AT1G33780.1	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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