23377 vWFA superfamilyThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
23377	chr_7	vWFA superfamily	400656	403995	-	vWFA superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7448955	Thaps23377.5, Thaps23377.1, Thaps23377.3, Thaps23377.2, Thaps23377.4

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0491

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0019	0.40	0.000000047 0.0044

Most Highly Correlated Transcripts

bd616 (bd616) NA 0.8863	bd1835 (bd1835) NA 0.8797	bd153 (bd153) NA 0.8607	bd824 (bd824) NA 0.8245	bd409 (bd409) Snf7 superfamily 0.8048	bd1877 (bd1877) NA 0.7914
bd453 (bd453) Mito_carr 0.7782	bd938 (bd938) PBP2_NikA_DppA_OppA_like superfamily 0.7769	bd1890 (bd1890) NA 0.7758	bd933 (bd933) NA 0.7743

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
vWFA superfamily		Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von...	-	100.04	7.18E-24	215 - 382	superfamily	260163
COG2304		Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function...	-	63.8173	7.15E-11	204 - 379	multi-dom	225187

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_54892	PHATRDRAFT_54892	Not available	Not available	465161	Cre09.g395843.t1.1	AT3G54780.1	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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