24715 WD40 superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
24715 chr_13 WD40 superfamily 841283 843116 + WD40 superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7447873 Thaps24715.1, Thaps24715.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0223

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0230
 0.24

Most Highly Correlated Transcripts

bd96

(bd96) eIF-3_zeta
0.9267

268596

CBF
0.9265

bd1709

(bd1709) NA
0.9254

268744

SUA5
0.9238

268145

PLN00040
0.9223

40223

PLN02347
0.9184

30833

Bystin
0.9109

268735

(GPB1) WD40
0.9093

bd1667

(bd1667) Mpp10
0.9077

23900

hypothetical protein
0.9051

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
WD40 superfamily WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions... - 139.778 1.14E-37 140 - 495 superfamily 238121
COG2319 FOG: WD40 repeat [General function prediction only] - 113.645 1.72E-27 73 - 497 multi-dom 225201

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_14176 PHATRDRAFT_14176 223390 300792 70484 Cre12.g487200.t1.1 AT1G71840.1 551235

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003847 -

GO:0003847

1-alkyl-2-acetylglycerophosphocholine esterase activity

Details: 
Catalysis of the reaction: 2-acetyl-1-alkyl-sn-glycero-3-phosphocholine + H2O = 1-alkyl-sn-glycero-3-phosphocholine + acetate.
GO Category: 
MF

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