2575 RIO superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
2575	chr_2	RIO superfamily	1336114	1338608	+	RIO superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7450412	Thaps2575.2, Thaps2575.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0214

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0245	0.28	12000 980

Most Highly Correlated Transcripts

5659 hypothetical protein 0.9187	25944 p450 superfamily 0.91	11594 DUF2042 superfamily 0.9096	23514 hypothetical protein 0.9096	3842 hypothetical protein 0.9079	22963 WD40 superfamily 0.9068
268761 hypothetical protein 0.9041	6693 hypothetical protein 0.9038	3837 UshA 0.9032	20664 hypothetical protein 0.9032

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
RIO superfamily		RIO kinase family, catalytic domain. The RIO kinase catalytic domain family is part of a larger...	-	193.495	5.01E-57	500 - 719	superfamily	266585

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_46310	PHATRDRAFT_46310	151173	260703	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Ribosome biogenesis in eukaryotes	map03008

GO Terms

GO:0005554 -

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