261041 ATE_C
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
261041 chr_1 ATE_C 1949404 1950076 - ATE_C

Synonyms

NCBI ID Ensembl Genomes exon ID
7445013 Thaps261041.2, Thaps261041.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0310

Most Highly Correlated Transcripts

30701

PRK05279
0.9217

24790

Nitro_FMN_reductase superfamily
0.9018

27773

CAP_ED
0.9005

4267

COG0790
0.8981

263361

CHD
0.898

38736

S_TKc
0.8976

19826

LSm1
0.8966

41780

S_TKc
0.896

29469

hypothetical protein
0.8959

264321

PP2Cc
0.8949

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ATE_C superfamily Arginine-tRNA-protein transferase, C terminus; This family represents the C terminal region of the... - 139.906 3.85E-42 5 - 106 superfamily 252553
ATE_C superfamily Arginine-tRNA-protein transferase, C terminus; This family represents the C terminal region of the... - 139.906 3.85E-42 5 - 106 superfamily 252553

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_48924 PHATRDRAFT_48924 152977 250146 Not available Cre13.g580600.t1.2 AT5G05700.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004057 GO:0016598 GO:0042176 -

GO:0004057

arginyltransferase activity

Details: 
Catalysis of the reaction: L-arginyl-tRNA + protein = tRNA + L-arginyl-protein.
GO Category: 
MF

GO:0016598

protein arginylation

Details: 
The conjugation of arginine to the N-terminal aspartate or glutamate of a protein; required for the degradation of the protein via the ubiquitin pathway.
GO Category: 
BP

GO:0042176

regulation of protein catabolic process

Details: 
Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds.
GO Category: 
BP

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