262016 Aa_trans superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
262016 chr_4 Aa_trans superfamily 162673 164233 + Aa_trans superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7446735 Thaps262016.1, Thaps262016.4, Thaps262016.3, Thaps262016.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0103

Most Highly Correlated Transcripts

3310

hypothetical protein
0.9239

3161

hypothetical protein
0.9112

22468

hypothetical protein
0.9097

268931

hypothetical protein
0.9087

21459

hypothetical protein
0.9076

bd874

(bd874) NA
0.9075

2494

UAA
0.9067

1000

hypothetical protein
0.9019

7444

hypothetical protein
0.899

9419

hypothetical protein
0.8987

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Aa_trans superfamily Transmembrane amino acid transporter protein; This transmembrane region is found in many amino acid... - 153.993 7.97E-42 73 - 461 superfamily 266708
SdaC Amino acid permeases [Amino acid transport and metabolism] - 79.2324 2.89E-16 78 - 455 multi-dom 223884

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_49568 PHATRDRAFT_49568 149325 320041 Not available Not available Not available 350410

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005279 GO:0006865 GO:0016020 -

GO:0005279

NA

Details: 
NA
GO Category: 
NA

GO:0006865

amino acid transport

Details: 
The directed movement of amino acids, organic acids containing one or more amino substituents, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO Category: 
BP

GO:0016020

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC

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