262708 TPR
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
262708 chr_6 TPR 309740 312695 - TPR

Synonyms

NCBI ID Ensembl Genomes exon ID
7448400 Thaps262708.2, Thaps262708.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0092

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0144
 0.22

Most Highly Correlated Transcripts

bd765

(bd765) NA
0.9784

bd1081

(bd1081) NA
0.9748

11130

hypothetical protein
0.9744

7192

hypothetical protein
0.9665

36911

Rhomboid
0.9619

bd1173

(bd1173) S_TKc
0.9603

1201

hypothetical protein
0.9578

1055

hypothetical protein
0.9563

24160

hypothetical protein
0.9552

10992

hypothetical protein
0.9547

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
TPR superfamily Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF... - 65.094 1.48E-12 633 - 748 superfamily 238112
TPR superfamily Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF... - 65.094 1.48E-12 633 - 748 superfamily 238112
TPR superfamily Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF... - 65.094 1.48E-12 633 - 748 superfamily 238112
TPR superfamily Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF... - 65.094 1.48E-12 633 - 748 superfamily 238112
TPR_12 Tetratricopeptide repeat; Tetratricopeptide repeat. - 63.9354 2.31E-12 754 - 831 multi-dom 257749
TPR_12 Tetratricopeptide repeat; Tetratricopeptide repeat. - 63.9354 2.31E-12 754 - 831 multi-dom 257749

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_38879 PHATRDRAFT_38879 198191 191530 65319 Not available AT1G27500.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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