263428 WD40 superfamilyThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
263428	chr_8	WD40 superfamily	845873	847875	+	WD40 superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7449835	Thaps263428.2, Thaps263428.1, Thaps263428.3, Thaps263428.4

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0035

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0028	0.44

Most Highly Correlated Transcripts

bd616 (bd616) NA 0.908	3230 hypothetical protein 0.8545	10474 hypothetical protein 0.8383	4894 hypothetical protein 0.8305	31979 ENDO3c 0.8256	22153 DnaJ 0.817
1855 hypothetical protein 0.8145	41655 Chloroa_b-bind 0.813	13448 Sec1 0.8126	2148 DUF1826 superfamily 0.8115

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
WD40 superfamily		WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions...	-	82.768	8.19E-18	252 - 461	superfamily	238121
COG2319		FOG: WD40 repeat [General function prediction only]	-	83.9847	1.73E-17	116 - 455	multi-dom	225201

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATR_36668	PHATR_36668	225396	222372	232478	Cre02.g111350.t1.2	AT1G80710.1	520087

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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