264679 Syja_NThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
264679	chr_20	Syja_N	191912	196030	-	Syja_N

Synonyms

NCBI ID	Ensembl Genomes exon ID
7448504	Thaps264679.1, Thaps264679.6, Thaps264679.2, Thaps264679.8, Thaps264679.3, Thaps264679.7, Thaps264679.4, Thaps264679.5

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0261

Most Highly Correlated Transcripts

12500 SNF2_N 0.9674	8518 hypothetical protein 0.9512	264072 (HSF43) HSF_DNA-bind superfamily 0.9479	11371 hypothetical protein 0.9476	33984 PKc_like superfamily 0.9458	263191 PLN03076 0.9438
261495 Peptidase_M36 0.9422	37862 S_TKc 0.9421	263963 Adaptin_N 0.9415	37638 HrpA 0.9415

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Syja_N superfamily		SacI homology domain; This Pfam family represents a protein domain which shows homology to the...	-	312.618	1.83E-97	333 - 639	superfamily	251261
Syja_N superfamily		SacI homology domain; This Pfam family represents a protein domain which shows homology to the...	-	312.618	1.83E-97	333 - 639	superfamily	251261

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_9639	PHATRDRAFT_9639	146901	256456	450701	Cre12.g537500.t1.1	AT1G22620.1	297483

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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