264816 ABC_ATPase superfamily
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
264816 chr_22 ABC_ATPase superfamily 523279 527853 + ABC_ATPase superfamily
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0266
Normalized Mean Residue
Thaps_bicluster_0016
0.55
(bd1313) psbH
0.9206
(bd2073) psbB
0.9195
(bd668) NA
0.9154
(bd1092) NA
0.9139
DUF1162 superfamily
0.9076
(bd794) NA
0.9041
(bd137) Motor_domain superfamily
0.8989
(bd467) Cytochrome_b_N
0.8982
hypothetical protein
0.8978
rad3
0.8977
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
GIY-YIG_MSH Catalytic GIY-YIG domain of eukaryotic DNA mismatch repair protein MutS homologs; This family... cl15257 121.812 4.22E-32 1335 - 1410 specific 198385
GIY-YIG_SF superfamily GIY-YIG nuclease domain superfamily; The GIY-YIG nuclease domain superfamily includes a large and... - 121.812 4.22E-32 1335 - 1410 superfamily 265657
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 152.018 4.55E-41 1080 - 1265 superfamily 266551
MutS_I superfamily MutS domain I; This domain is found in proteins of the MutS family (DNA mismatch repair proteins)... - 65.2891 2.89E-12 451 - 551 superfamily 250754
MutS Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair] - 153.209 5.65E-38 459 - 1276 multi-dom 223327
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_53933 PHATRDRAFT_53933 248537 186574 205782 Cre06.g250850.t1.1 AT3G24320.1 Not available
KEGG description KEGG Pathway
Not available Not available
GO:0004518 GO:0005622 GO:0006281 GO:0003684 GO:0005524 GO:0006298 -

nuclease activity

Details: 
Catalysis of the hydrolysis of ester linkages within nucleic acids.
GO Category: 
MF

intracellular

Details: 
The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO Category: 
CC

DNA repair

Details: 
The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
GO Category: 
BP

damaged DNA binding

Details: 
Interacting selectively and non-covalently with damaged DNA.
GO Category: 
MF

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

mismatch repair

Details: 
A system for the correction of errors in which an incorrect base, which cannot form hydrogen bonds with the corresponding base in the parent strand, is incorporated into the daughter strand. The mismatch repair system promotes genomic fidelity by repairing base-base mismatches, insertion-deletion loops and heterologies generated during DNA replication and recombination.
GO Category: 
BP
Log in to post comments