2669 MmsB
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
2669 chr_2 MmsB 1563610 1564726 + MmsB

Synonyms

NCBI ID Ensembl Genomes exon ID
7446671 Thaps2669.2, Thaps2669.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0211

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0131
 0.35

Most Highly Correlated Transcripts

26991

GRX_GRXh_1_2_like
0.9614

22171

hypothetical protein
0.9557

23516

hypothetical protein
0.9285

23399

PTZ00184
0.9245

35025

Lung_7-TM_R superfamily
0.9233

31829

CBS_like
0.9227

36649

SufE superfamily
0.9196

11183

hypothetical protein
0.9181

10856

hypothetical protein
0.9176

4292

hypothetical protein
0.9153

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
NAD_binding_2 NAD binding domain of 6-phosphogluconate dehydrogenase; The NAD binding domain of 6-... cl19126 142.591 4.43E-41 36 - 207 specific 251959
F420_oxidored superfamily NADP oxidoreductase coenzyme F420-dependent; NADP oxidoreductase coenzyme F420-dependent. - 142.591 4.43E-41 36 - 207 superfamily 267479
NAD_binding_11 superfamily NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; 3-Hydroxyisobutyrate is a central... - 74.435 1.29E-16 210 - 330 superfamily 258970
MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] - 227.856 3.56E-72 36 - 334 multi-dom 224995

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_17487 PHATRDRAFT_17487 180727 201728 252918 Cre06.g278148.t1.1 AT1G17650.1 353893

KEGG

KEGG description KEGG Pathway
Metabolic pathways map01100

GO Terms

GO:0006573 GO:0008442 GO:0004616 GO:0006098 -

GO:0006573

valine metabolic process

Details: 
The chemical reactions and pathways involving valine, 2-amino-3-methylbutanoic acid.
GO Category: 
BP

GO:0008442

3-hydroxyisobutyrate dehydrogenase activity

Details: 
Catalysis of the reaction: 3-hydroxy-2-methylpropanoate + NAD+ = 2-methyl-3-oxopropanoate + NADH + H+.
GO Category: 
MF

GO:0004616

phosphogluconate dehydrogenase (decarboxylating) activity

Details: 
Catalysis of the reaction: 6-phospho-D-gluconate + NADP+ = D-ribulose 5-phosphate + CO2 + NADPH + H+.
GO Category: 
MF

GO:0006098

pentose-phosphate shunt

Details: 
The process in which glucose is oxidized, coupled to NADPH synthesis. Glucose 6-P is oxidized with the formation of carbon dioxide (CO2), ribulose 5-phosphate and reduced NADP; ribulose 5-P then enters a series of reactions interconverting sugar phosphates. The pentose phosphate pathway is a major source of reducing equivalents for biosynthesis reactions and is also important for the conversion of hexoses to pentoses.
GO Category: 
BP

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