268835 (ECI1) ECH
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
268835 chr_5 (ECI1) ECH 361866 362987 - ECH

Synonyms

NCBI ID Ensembl Genomes exon ID
7449667 Thaps268835.1, Thaps268835.3, Thaps268835.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0475

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0158
 0.37

Most Highly Correlated Transcripts

8439

NADB_Rossmann superfamily
0.887

16372

Aldo_ket_red
0.8678

24303

DUF647 superfamily
0.8577

3601

Ion_trans_2
0.8563

10096

hypothetical protein
0.856

3487

(Tp_CCCH24) regulator [Rayko]
0.8463

22765

hypothetical protein
0.8364

24235

Peptidase_C19 superfamily
0.8361

9479

ATG22
0.8254

11101

TauE
0.8098

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of... cl18948 153.87 3.84E-45 44 - 234 specific 119339
crotonase-like superfamily Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of... - 153.87 3.84E-45 44 - 234 superfamily 267301
ECH Enoyl-CoA hydratase/isomerase family; This family contains a diverse set of enzymes including:... - 164.392 1.32E-48 49 - 306 multi-dom 249813

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_18064 PHATRDRAFT_18064 159942 136368 99752 Cre03.g190850.t1.2 Not available 552881

KEGG

KEGG description KEGG Pathway
Fatty acid metabolism map00071

GO Terms

GO:0003824 GO:0008152 GO:0004165 -

GO:0003824

catalytic activity

Details: 
Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO Category: 
MF

GO:0008152

metabolic process

Details: 
The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO Category: 
BP

GO:0004165

dodecenoyl-CoA delta-isomerase activity

Details: 
Catalysis of the reaction: 3-cis-dodecenoyl-CoA = 2-trans-dodecenoyl-CoA.
GO Category: 
MF

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