268970 PGDH_like_3
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
268970 chr_5 PGDH_like_3 2141009 2143046 + PGDH_like_3

Synonyms

NCBI ID Ensembl Genomes exon ID
7444915 Thaps268970.1, Thaps268970.3, Thaps268970.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0221

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0226
 0.29

Most Highly Correlated Transcripts

36650

hypothetical protein
0.8581

26678

(TKT1) PLN02790
0.8565

2157

D123 superfamily
0.8515

31516

SIK1
0.8402

5532

hypothetical protein
0.8399

3018

AAT_I
0.8355

32790

RRM_eIF3G_like
0.8279

21709

hypothetical protein
0.8197

5794

hypothetical protein
0.8187

22861

hypothetical protein
0.8151

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PGDH_like_3 Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains; Phosphoglycerate... cl17240 344.544 2.51E-115 64 - 371 specific 240651
FDH_GDH_like superfamily Formate/glycerate dehydrogenases, D-specific 2-hydroxy acid dehydrogenases and related... - 344.544 2.51E-115 64 - 371 superfamily 266580
ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and... cl09141 82.9408 1.48E-19 386 - 461 specific 153173
ACT superfamily ACT domains are commonly involved in specifically binding an amino acid or other small ligand... - 82.9408 1.48E-19 386 - 461 superfamily 263730

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_45592 PHATRDRAFT_45592 Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Metabolic pathways map01100

GO Terms

GO:0006564 GO:0016616 GO:0004617 -

GO:0006564

L-serine biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of L-serine, the L-enantiomer of serine, i.e. (2S)-2-amino-3-hydroxypropanoic acid.
GO Category: 
BP

GO:0016616

oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

Details: 
Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP.
GO Category: 
MF

GO:0004617

phosphoglycerate dehydrogenase activity

Details: 
Catalysis of the reaction: 3-phosphoglycerate + NAD+ = 3-phosphohydroxypyruvate + NADH + H+.
GO Category: 
MF

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