27922 CAP_GLYThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
27922	chr_4	CAP_GLY	1290836	1292146	+	CAP_GLY

Synonyms

NCBI ID	Ensembl Genomes exon ID
7448793	Thaps27922.1, Thaps27922.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0373

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0023	0.43

Most Highly Correlated Transcripts

270222 0.8923	728 (ELO3) ELO 0.7709	23626 Hydrolase_3 0.7572	10550 hypothetical protein 0.7559	bd945 (bd945) COG3899 0.7502	bd954 (bd954) NA 0.7502
261500 (atpC_2) ATP-synt_C superfamily 0.7444	14384 cyclophilin superfamily 0.744	25072 hypothetical protein 0.7368	13448 Sec1 0.7356

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
CAP_GLY		CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organisation of...	cl08315	81.0219	7.75E-20	183 - 252	specific	250520
CAP_GLY superfamily		CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organisation of...	-	81.0219	7.75E-20	183 - 252	superfamily	263584

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_5738	PHATRDRAFT_5738	161051	326299	76170	Cre15.g636300.t1.2	AT3G10220.1	259289

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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