28209 (RS23) Ribosomal_S23
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
28209 chr_5 (RS23) Ribosomal_S23 381360 381860 + Ribosomal_S23

Synonyms

NCBI ID Ensembl Genomes exon ID
7451741 Thaps28209.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0046

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0205
 0.26

Most Highly Correlated Transcripts

25949

(RL11A) PTZ00156
0.9429

6363

(RL23a) PTZ00191
0.923

29955

(RS5) PTZ00091
0.9165

25242

hypothetical protein
0.9127

42457

(RS25) Ribosomal_S25
0.9078

26250

(RL26) KOW_RPL26
0.9071

27292

(RS4) PLN00036
0.9067

37628

Ribosomal_L7Ae
0.9047

26893

(RS18) PTZ00134
0.9045

39499

(RL14) Ribosomal_L14e
0.9036

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Ribosomal_S23 S12-like family, 40S ribosomal protein S23 subfamily; S23 is located at the interface of the large... cl00312 217.522 2.20E-73 26 - 140 specific 239465
Ribosomal_S12_like superfamily Ribosomal protein S12-like family; composed of prokaryotic 30S ribosomal protein S12, eukaryotic... - 217.522 2.20E-73 26 - 140 superfamily 241773

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_50701 PHATRDRAFT_50701 273042 244968 434089 Cre12.g504200.t1.2 AT5G02960.1 355273

KEGG

KEGG description KEGG Pathway
Ribosome map03010

GO Terms

GO:0003735 GO:0006412 GO:0015935 GO:0005622 GO:0005840 -

GO:0003735

structural constituent of ribosome

Details: 
The action of a molecule that contributes to the structural integrity of the ribosome.
GO Category: 
MF

GO:0006412

translation

Details: 
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
GO Category: 
BP

GO:0015935

small ribosomal subunit

Details: 
The smaller of the two subunits of a ribosome.
GO Category: 
CC

GO:0005622

intracellular

Details: 
The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO Category: 
CC

GO:0005840

ribosome

Details: 
An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
GO Category: 
CC

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