29842 Rieske_2Thalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
29842	chr_13	Rieske_2	494221	495214	+	Rieske_2

Synonyms

NCBI ID	Ensembl Genomes exon ID
7445769	Thaps29842.2, Thaps29842.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0022

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0218	0.15	610 9100

Most Highly Correlated Transcripts

bd1160 (bd1160) Chloroa_b-bind superfamily 0.988	bd1820 (bd1820) Fasciclin 0.9849	29375 Chloroa_b-bind 0.9835	bd218 (bd218) Chloroa_b-bind superfamily 0.9814	40747 Chloroa_b-bind 0.9718	21472 NA 0.9717
bd1863 (bd1863) NA 0.9717	2342 (Lhcr11) fucoxanthin chlorophyll a/c light-harvesting protein 0.9699	2341 (Lhcr12) fucoxanthin chlorophyll a/c protein 0.9665	39813 Chloroa_b-bind superfamily 0.9661

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Rieske_2		Rieske-like [2Fe-2S] domain; Rieske-like [2Fe-2S] domain.	cl00938	94.1403	4.99E-25	38 - 151	specific	205979
Rieske superfamily		Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (...	-	94.1403	4.99E-25	38 - 151	superfamily	260709

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_9046	PHATRDRAFT_9046	219110	310363	432789	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0006118 GO:0016491 -

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