30400 COG0390
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
30400 chr_18 COG0390 608318 610496 + COG0390

Synonyms

NCBI ID Ensembl Genomes exon ID
7444806 Thaps30400.1, Thaps30400.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0188

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0048
 0.39

Most Highly Correlated Transcripts

24546

hypothetical protein
0.9008

264851

COG3899
0.8907

37862

S_TKc
0.8906

263979

PKc_like superfamily
0.887

4576

MATE_like superfamily
0.8853

10873

NA
0.8825

260914

MFS
0.8796

34795

Cas1_AcylT superfamily
0.8795

3320

Abhydrolase_5
0.8792

8003

PIG-L
0.8791

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
COG0390 ABC-type uncharacterized transport system, permease component [General function prediction only] cl00424 160.181 9.71E-45 78 - 309 specific 223467
UPF0014 superfamily Uncharacterized protein family (UPF0014); Uncharacterised protein family (UPF0014). - 160.181 9.71E-45 78 - 309 superfamily 241854
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 110.701 1.80E-27 439 - 642 superfamily 266551
cbiO cobalt transport protein ATP-binding subunit; This model describes the ATP binding subunit of the... - 90.5602 9.47E-21 434 - 647 multi-dom 130234

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_15102 PHATRDRAFT_15102 192490 188348 Not available Not available AT2G37330.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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