31001 Y_phosphoryl
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
31001 chr_1 Y_phosphoryl 806731 808277 + Y_phosphoryl

Synonyms

NCBI ID Ensembl Genomes exon ID
7453461 Thaps31001.2, Thaps31001.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0485

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0170
 0.34

Most Highly Correlated Transcripts

bd740

(bd740) NA
0.8745

5909

(Tp_HSF_2.3c) HSF_DNA-bind superfamily
0.8407

263374

NagC
0.837

bd1803

(bd1803) NA
0.8255

22783

CRCB
0.813

7379

(Tp_HSF_2.6d) HSF_DNA-bind superfamily
0.8098

bd739

(bd739) NA
0.8024

269115

hypothetical protein
0.8

bd945

(bd945) COG3899
0.7962

bd954

(bd954) NA
0.7962

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Glycos_transf_3 superfamily Glycosyl transferase family, a/b domain; This family includes anthranilate... - 130.469 1.03E-34 97 - 343 superfamily 249986
PYNP_C Pyrimidine nucleoside phosphorylase C-terminal domain; This domain is found at the C-terminal end... cl06734 91.076 1.88E-22 383 - 457 specific 116444
PYNP_C superfamily Pyrimidine nucleoside phosphorylase C-terminal domain; This domain is found at the C-terminal end... - 91.076 1.88E-22 383 - 457 superfamily 244483
Glycos_trans_3N superfamily Glycosyl transferase family, helical bundle domain; This family includes anthranilate... - 74.8611 9.16E-17 15 - 81 superfamily 251593
Glycos_trans_3N superfamily Glycosyl transferase family, helical bundle domain; This family includes anthranilate... - 74.8611 9.16E-17 15 - 81 superfamily 251593
Y_phosphoryl pyrimidine-nucleoside phosphorylase; In general, members of this protein family are designated... - 519.867 0 16 - 445 multi-dom 233961

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_39151 PHATRDRAFT_39151 211024 293054 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0006206 GO:0008152 GO:0016757 GO:0009032 -

GO:0006206

pyrimidine nucleobase metabolic process

Details: 
The chemical reactions and pathways involving pyrimidine nucleobases, 1,3-diazine, organic nitrogenous bases.
GO Category: 
BP

GO:0008152

metabolic process

Details: 
The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO Category: 
BP

GO:0016757

transferase activity, transferring glycosyl groups

Details: 
Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor).
GO Category: 
MF

GO:0009032

thymidine phosphorylase activity

Details: 
Catalysis of the reaction: thymidine + phosphate = thymine + 2-deoxy-D-ribose 1-phosphate.
GO Category: 
MF

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