31383 (GAPD1) GapA
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
31383 chr_1 (GAPD1) GapA 1404596 1405723 + GapA

Synonyms

NCBI ID Ensembl Genomes exon ID
7445019 Thaps31383.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0015

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0204
 0.18

Most Highly Correlated Transcripts

bd218

(bd218) Chloroa_b-bind superfamily
0.9814

270304

hypothetical protein
0.9632

bd718

(bd718) PRK10387
0.9602

bd1306

(bd1306) NA
0.96

bd1820

(bd1820) Fasciclin
0.9567

bd1160

(bd1160) Chloroa_b-bind superfamily
0.9536

bd1863

(bd1863) NA
0.9512

bd1342

(bd1342) psaL
0.9466

bd1378

(bd1378) atpI
0.9458

35712

Phosphoglycerate_kinase
0.9403

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Gp_dh_C Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; GAPDH is a tetrameric NAD-binding... cl19935 273.66 3.13E-91 192 - 349 specific 251539
Gp_dh_C superfamily Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; GAPDH is a tetrameric NAD-binding... - 273.66 3.13E-91 192 - 349 superfamily 268288
Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; GAPDH is a tetrameric NAD-binding... cl17742 208.9 3.38E-66 41 - 187 specific 249536
Gp_dh_N superfamily Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; GAPDH is a tetrameric NAD-binding... - 208.9 3.38E-66 41 - 187 superfamily 266804
GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate... - 459.329 1.56E-161 41 - 367 multi-dom 223135

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_22122 PHATRDRAFT_22122 177007 35162 441919 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Biosynthesis of secondary metabolites map01110

GO Terms

GO:0004365 GO:0006096 GO:0051287 GO:0006006 GO:0008943 GO:0005737 -

GO:0004365

glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity

Details: 
Catalysis of the reaction: D-glyceraldehyde 3-phosphate + phosphate + NAD+ = 3-phospho-D-glyceroyl phosphate + NADH + H+.
GO Category: 
MF

GO:0006096

glycolysis

Details: 
The chemical reactions and pathways resulting in the breakdown of a monosaccharide (generally glucose) into pyruvate, with the concomitant production of a small amount of ATP. Glycolysis begins with phosphorylation of a monosaccharide (generally glucose) on the sixth carbon by a hexokinase, and ends with the production of pyruvate. Pyruvate may be converted to ethanol, lactate, or other small molecules, or fed into the TCA cycle.
GO Category: 
BP

GO:0051287

NAD binding

Details: 
Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH.
GO Category: 
MF

GO:0006006

glucose metabolic process

Details: 
The chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides.
GO Category: 
BP

GO:0008943

NA

Details: 
NA
GO Category: 
NA

GO:0005737

cytoplasm

Details: 
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO Category: 
CC

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