32191 EAP30Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
32191	chr_2	EAP30	482010	482798	-	EAP30

Synonyms

NCBI ID	Ensembl Genomes exon ID
7442251	Thaps32191.1, Thaps32191.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0132

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0024	0.39

Most Highly Correlated Transcripts

261400 NA 0.8751	23170 hypothetical protein 0.8689	262863 BAR_SNX 0.8686	38123 Arrestin_N superfamily 0.8646	31136 Pkinase_Tyr 0.8621	16295 FBPase 0.8602
268619 Ras_like_GTPase superfamily 0.86	264556 FBPase 0.8595	16114 PLN02350 0.8591	262296 Hydrolase_4 superfamily 0.859

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
EAP30 superfamily		EAP30/Vps36 family; This family includes EAP30 as well as the Vps36 protein. Vps36 is involved in...	-	140.098	1.19E-40	19 - 222	superfamily	252418
EAP30 superfamily		EAP30/Vps36 family; This family includes EAP30 as well as the Vps36 protein. Vps36 is involved in...	-	140.098	1.19E-40	19 - 222	superfamily	252418

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
5552	PHATRDRAFT_16493	PHATRDRAFT_16493	181090	200667	Not available	Cre17.g706650.t1.2	AT4G27040.4	554692

KEGG

KEGG description	KEGG Pathway
Endocytosis	map04144

GO Terms

Not available -

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