32744 VacB
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
32744 chr_3 VacB 571553 575091 - VacB

Synonyms

NCBI ID Ensembl Genomes exon ID
7444060 Thaps32744.2, Thaps32744.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0230

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0093
 0.41

Most Highly Correlated Transcripts

14890

Cupin_8 superfamily
0.8684

13578

SrmB
0.8484

16947

DEXDc superfamily
0.8471

4038

hypothetical protein
0.844

24015

Urb2 superfamily
0.8394

bd1667

(bd1667) Mpp10
0.8364

15336

DUS_like_FMN
0.8339

268746

SXM1
0.8338

24445

hypothetical protein
0.8308

262722

DEXDc superfamily
0.8304

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RNB RNB domain; This domain is the catalytic domain of ribonuclease II. cl19762 355.067 1.85E-112 641 - 975 specific 250123
RNB superfamily RNB domain; This domain is the catalytic domain of ribonuclease II. - 355.067 1.85E-112 641 - 975 superfamily 268115
PIN_SF superfamily PIN (PilT N terminus) domain: Superfamily; PIN_SF The PIN (PilT N terminus) domain belongs to a... - 106.197 1.34E-25 37 - 288 superfamily 265458
VacB Exoribonuclease R [Transcription] - 441.445 1.61E-139 423 - 1110 multi-dom 223631

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_23306 PHATRDRAFT_23306 207134 218408 451876 Not available AT2G17510.1 358582

KEGG

KEGG description KEGG Pathway
RNA degradation map03018

GO Terms

GO:0003723 GO:0004540 GO:0000175 GO:0004534 GO:0016896 -

GO:0003723

RNA binding

Details: 
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO Category: 
MF

GO:0004540

ribonuclease activity

Details: 
Catalysis of the hydrolysis of phosphodiester bonds in chains of RNA.
GO Category: 
MF

GO:0000175

3'-5'-exoribonuclease activity

Details: 
Catalysis of the sequential cleavage of mononucleotides from a free 3' terminus of an RNA molecule.
GO Category: 
MF

GO:0004534

5'-3' exoribonuclease activity

Details: 
Catalysis of the sequential cleavage of mononucleotides from a free 5' terminus of an RNA molecule.
GO Category: 
MF

GO:0016896

exoribonuclease activity, producing 5'-phosphomonoesters

Details: 
Catalysis of the hydrolysis of ester linkages within ribonucleic acids by removing nucleotide residues from the 3' or 5' end to yield 5' phosphomonoesters.
GO Category: 
MF

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