3393 Form_Nir_trans
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
3393 chr_3 Form_Nir_trans 849079 850306 + Form_Nir_trans

Synonyms

NCBI ID Ensembl Genomes exon ID
7444757 Thaps3393.3, Thaps3393.1, Thaps3393.4, Thaps3393.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0360

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0038
 0.59

Most Highly Correlated Transcripts

24172

hypothetical protein
0.8506

25478

hypothetical protein
0.8239

27414

(NRT1) 2A0108
0.8161

1440

hypothetical protein
0.7952

17687

AAA
0.7937

262125

(NIR_2) PLN02431
0.7863

269274

(NRT2) 2A0108
0.784

5394

hypothetical protein
0.781

23657

globin
0.7801

269297

S_TKc
0.7486

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Form_Nir_trans Formate/nitrite transporter; Formate/nitrite transporter. cl00927 236.626 2.09E-76 61 - 305 specific 250459
Form_Nir_trans superfamily Formate/nitrite transporter; Formate/nitrite transporter. - 236.626 2.09E-76 61 - 305 superfamily 260699

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_13076 PHATRDRAFT_13076 262069 311306 439254 Cre06.g309000.t1.2 Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005215 GO:0006810 GO:0016020 -

GO:0005215

transporter activity

Details: 
Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells.
GO Category: 
MF

GO:0006810

transport

Details: 
The directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or pore.
GO Category: 
BP

GO:0016020

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC

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