35932 ArfGapThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
35932	chr_8	ArfGap	592872	593495	+	ArfGap

Synonyms

NCBI ID	Ensembl Genomes exon ID
7450170	Thaps35932.2, Thaps35932.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0168

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0018	0.42

Most Highly Correlated Transcripts

22257 hypothetical protein 0.9357	5551 hypothetical protein 0.8745	10873 NA 0.8663	9569 hypothetical protein 0.8602	7299 hypothetical protein 0.8433	596 Adaptin_N 0.8428
bd733 (bd733) NA 0.8398	11299 hypothetical protein 0.8317	8693 hypothetical protein 0.8264	11314 hypothetical protein 0.8255

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
ArfGap		Putative GTPase activating protein for Arf; Putative zinc fingers with GTPase activating proteins (...	cl02464	146.612	1.13E-45	11 - 118	specific	250600
ArfGap superfamily		Putative GTPase activating protein for Arf; Putative zinc fingers with GTPase activating proteins (...	-	146.612	1.13E-45	11 - 118	superfamily	261296

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_50442	PHATRDRAFT_50442	180072	325880	Not available	Cre09.g386550.t1.2	AT3G53710.2	358803

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0043087 -

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