38289 KefBThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
38289	chr_19a_19	KefB	313152	315986	-	KefB

Synonyms

NCBI ID	Ensembl Genomes exon ID
7449914	Thaps38289.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0232

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0070	0.44	0.00068 410

Most Highly Correlated Transcripts

4108 hypothetical protein 0.9163	bd1161 (bd1161) NA 0.9078	bd1893 (bd1893) NA 0.8824	bd1078 (bd1078) NA 0.8726	bd718 (bd718) PRK10387 0.8607	bd1645 (bd1645) tpt 0.8561
270334 hypothetical protein 0.85	bd1192 (bd1192) Acyl_ACP_Desat 0.849	bd1765 (bd1765) NA 0.8475	bd208 (bd208) DUF3529 0.8432

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
KefB		Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]	cl10482	270.265	2.31E-81	251 - 634	specific	223551
KefB superfamily		Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]	-	270.265	2.31E-81	251 - 634	superfamily	245312
TrkA_N superfamily		TrkA-N domain; This domain is found in a wide variety of proteins. These protein include potassium...	-	73.3719	3.12E-15	659 - 758	superfamily	251184
TrkA_N superfamily		TrkA-N domain; This domain is found in a wide variety of proteins. These protein include potassium...	-	73.3719	3.12E-15	659 - 758	superfamily	251184

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_11843	PHATRDRAFT_11843	157103	222053	452909	Cre04.g220200.t1.2	AT4G04850.2	252434

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0006813 -

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