38802 PHF5Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
38802	chr_23	PHF5	77689	78105	-	PHF5

Synonyms

NCBI ID	Ensembl Genomes exon ID
7448268	Thaps38802.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0273

Most Highly Correlated Transcripts

4680 hypothetical protein 0.9252	31150 rpsI 0.9167	11848 hypothetical protein 0.8973	261661 (RM4) Ribosomal_L4 0.8901	32216 (RT5) rpsE_bact 0.8901	37642 nascent-polypeptide-associated complex alpha polypeptide-like protein 0.8899
270087 WD40 0.8893	12130 hypothetical protein 0.8888	38679 UBQ superfamily 0.8867	37962 LSm3 0.8862

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
PHF5 superfamily		PHF5-like protein; This family of proteins the superfamily of PHD-finger proteins. At least one...	-	174.816	6.29E-57	2 - 106	superfamily	146345
PHF5 superfamily		PHF5-like protein; This family of proteins the superfamily of PHD-finger proteins. At least one...	-	174.816	6.29E-57	2 - 106	superfamily	146345

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_51232	PHATRDRAFT_51232	204845	311365	446407	Cre05.g234648.t1.1	AT2G30000.1	Not available

KEGG

KEGG description	KEGG Pathway
Spliceosome	map03040

GO Terms

GO:0005554 -

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