38924 PLN02627
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
38924 chr_24 PLN02627 97198 99427 - PLN02627

Synonyms

NCBI ID Ensembl Genomes exon ID
7451999 Thaps38924.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0015

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0168
 0.24

Most Highly Correlated Transcripts

bd1306

(bd1306) NA
0.9508

bd1160

(bd1160) Chloroa_b-bind superfamily
0.9486

bd1645

(bd1645) tpt
0.9438

270323

hypothetical protein
0.943

bd1820

(bd1820) Fasciclin
0.9399

22214

hypothetical protein
0.9394

bd1765

(bd1765) NA
0.9322

14192

PLN02449
0.9293

38306

Chloroa_b-bind
0.9287

bd218

(bd218) Chloroa_b-bind superfamily
0.9286

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
tRNA_bind_EMAP-II_like tRNA-binding-domain-containing EMAP2-like proteins. This family contains a diverse fraction of tRNA... cl00320 168.561 2.24E-49 574 - 678 specific 239198
tRNA_bindingDomain superfamily The tRNA binding domain is also known as the Myf domain in literature. This domain is found in a... - 168.561 2.24E-49 574 - 678 superfamily 260352
nt_trans superfamily nucleotidyl transferase superfamily; nt_trans (nucleotidyl transferase) This superfamily includes... - 257.13 9.89E-80 29 - 308 superfamily 260139
PLN02627 glutamyl-tRNA synthetase - 756.581 0 31 - 510 multi-dom 178234

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_52655 PHATRDRAFT_52655 214453 293526 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0000049 GO:0004812 GO:0016876 -

GO:0000049

tRNA binding

Details: 
Interacting selectively and non-covalently with transfer RNA.
GO Category: 
MF

GO:0004812

aminoacyl-tRNA ligase activity

Details: 
Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP.
GO Category: 
MF

GO:0016876

ligase activity, forming aminoacyl-tRNA and related compounds

Details: 
Catalysis of the joining of an amino acid and a nucleic acid (usually tRNA) or poly(ribitol phosphate), with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate. The reaction forms an aminoacyl-tRNA or a related compound.
GO Category: 
MF

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