4114 GAT_SFThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
4114	chr_4	GAT_SF	213191	213859	+	GAT_SF

Synonyms

NCBI ID	Ensembl Genomes exon ID
7446743	Thaps4114.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0137

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0071	0.35	1.7 24

Most Highly Correlated Transcripts

37934 GRX_PICOT_like 0.9301	26769 ERG4_ERG24 superfamily 0.9239	7469 hypothetical protein 0.9233	3204 hypothetical protein 0.917	23170 hypothetical protein 0.9165	26991 GRX_GRXh_1_2_like 0.9115
4603 COPIIcoated_ERV superfamily 0.9097	21168 hypothetical protein 0.9092	2944 hypothetical protein 0.908	3773 hypothetical protein 0.908

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
GAT_SF		GAT domain found in eukaryotic ADP-ribosylation factor (Arf)-binding proteins (GGAs), metazoan myb...	cl03906	71.5572	1.62E-16	35 - 112	specific	260087
GAT_SF superfamily		GAT domain found in eukaryotic ADP-ribosylation factor (Arf)-binding proteins (GGAs), metazoan myb...	-	71.5572	1.62E-16	35 - 112	superfamily	261939

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_46205	PHATRDRAFT_46205	246972	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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