41433 PRK06116
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
41433 chr_7 PRK06116 1734534 1736341 - PRK06116

Synonyms

NCBI ID Ensembl Genomes exon ID
7447184 Thaps41433.3, Thaps41433.4, Thaps41433.2, Thaps41433.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0146

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0040
 0.39

Most Highly Correlated Transcripts

4108

hypothetical protein
0.919

2319

hypothetical protein
0.8537

35048

FBP_aldolase_IIA
0.8351

22234

sensory_box
0.8273

2107

hypothetical protein
0.8269

30380

(TPI2) TIM
0.8251

889

hypothetical protein
0.8184

8472

Hydrolase_4
0.8072

262564

VATPase_H superfamily
0.8046

11939

hypothetical protein
0.7991

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Pyr_redox_dim superfamily Pyridine nucleotide-disulphide oxidoreductase, dimerization domain; This family includes both class... - 127.294 3.63E-35 353 - 467 superfamily 251571
Pyr_redox_dim superfamily Pyridine nucleotide-disulphide oxidoreductase, dimerization domain; This family includes both class... - 127.294 3.63E-35 353 - 467 superfamily 251571
Pyr_redox superfamily Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II... - 74.1319 2.49E-16 178 - 258 superfamily 249559
Pyr_redox superfamily Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II... - 74.1319 2.49E-16 178 - 258 superfamily 249559
PRK06116 glutathione reductase; Validated - 596.368 0 22 - 467 multi-dom 235701

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_35819 PHATRDRAFT_35819 260128 Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Glutathione metabolism map00480

GO Terms

GO:0006118 GO:0016491 GO:0050660 GO:0015036 GO:0005737 GO:0004362 GO:0006749 -

GO:0006118

NA

Details: 
NA
GO Category: 
NA

GO:0016491

oxidoreductase activity

Details: 
Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
GO Category: 
MF

GO:0050660

flavin adenine dinucleotide binding

Details: 
Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2.
GO Category: 
MF

GO:0015036

disulfide oxidoreductase activity

Details: 
Catalysis of the reaction: substrate with reduced sulfide groups = substrate with oxidized disulfide bonds.
GO Category: 
MF

GO:0005737

cytoplasm

Details: 
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO Category: 
CC

GO:0004362

glutathione-disulfide reductase activity

Details: 
Catalysis of the reaction: 2 glutathione + NADP+ = glutathione disulfide + NADPH + H+.
GO Category: 
MF

GO:0006749

glutathione metabolic process

Details: 
The chemical reactions and pathways involving glutathione, the tripeptide glutamylcysteinylglycine, which acts as a coenzyme for some enzymes and as an antioxidant in the protection of sulfhydryl groups in enzymes and other proteins; it has a specific role in the reduction of hydrogen peroxide (H2O2) and oxidized ascorbate, and it participates in the gamma-glutamyl cycle.
GO Category: 
BP

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