42258 WD40 superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
42258 chr_13 WD40 superfamily 780132 781626 + WD40 superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7450495 Thaps42258.1, Thaps42258.3, Thaps42258.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0301

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0273
 0.40

Most Highly Correlated Transcripts

bd1692

(bd1692) NA
0.9298

bd737

(bd737) NA
0.907

bd1890

(bd1890) NA
0.883

7335

hypothetical protein
0.8607

bd833

(bd833) NA
0.8588

bd735

(bd735) NA
0.8537

bd1954

(bd1954) NA
0.8433

bd1840

(bd1840) NA
0.8405

bd1851

(bd1851) NA
0.8397

bd885

(bd885) NA
0.8361

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
WD40 superfamily WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions... - 76.99 3.32E-16 174 - 337 superfamily 238121
COG2319 FOG: WD40 repeat [General function prediction only] - 71.2731 7.93E-14 107 - 345 multi-dom 225201

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_21794 PHATRDRAFT_21794 179515 290118 459986 Cre16.g674000.t1.2 AT1G12910.1 255066

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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