42828 ISOPREN_C2_like superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
42828 chr_19a_19 ISOPREN_C2_like superfamily 471058 472710 + ISOPREN_C2_like superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7449938 Thaps42828.3, Thaps42828.1, Thaps42828.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0455

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0121
 0.36

Most Highly Correlated Transcripts

4603

COPIIcoated_ERV superfamily
0.9085

41655

Chloroa_b-bind
0.9083

33353

TRX_family
0.9081

37934

GRX_PICOT_like
0.9051

9115

DnaJ
0.8982

6960

Methyltransf_31
0.8938

36669

TPT
0.8893

8338

hypothetical protein
0.8872

26991

GRX_GRXh_1_2_like
0.8858

38813

hypothetical protein
0.885

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ISOPREN_C2_like superfamily This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly... - 317.299 1.89E-105 8 - 351 superfamily 263556
PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional - 136.751 1.30E-36 1 - 351 multi-dom 215630

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
261541 PHATRDRAFT_24362 PHATRDRAFT_24362 Not available Not available 439295 Not available AT2G39550.1 298590

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003824 -

GO:0003824

catalytic activity

Details: 
Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO Category: 
MF

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