5028 RdRPThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
5028	chr_5	RdRP	204781	207536	-	RdRP

Synonyms

NCBI ID	Ensembl Genomes exon ID
7448462	Thaps5028.2, Thaps5028.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0407

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0003	0.47	11000 2

Most Highly Correlated Transcripts

12836 EEP superfamily 0.902	4565 hypothetical protein 0.9007	8535 hypothetical protein 0.8974	21158 hypothetical protein 0.8939	27813 Hid1 superfamily 0.8925	25619 hypothetical protein 0.8922
22265 hypothetical protein 0.8886	262157 E1_like_apg7 0.8884	3929 Peptidase_C48 superfamily 0.887	1275 hypothetical protein 0.8848

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
RdRP superfamily		RNA dependent RNA polymerase; This family of proteins are eukaryotic RNA dependent RNA polymerases...	-	178.495	1.08E-47	360 - 871	superfamily	253066
RdRP superfamily		RNA dependent RNA polymerase; This family of proteins are eukaryotic RNA dependent RNA polymerases...	-	178.495	1.08E-47	360 - 871	superfamily	253066

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_45417	PHATRDRAFT_45417	Not available	Not available	464640	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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