6447 PI-PLCc_At5g67130_likeThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
6447	chr_6	PI-PLCc_At5g67130_like	1596312	1600507	-	PI-PLCc_At5g67130_like

Synonyms

NCBI ID	Ensembl Genomes exon ID
7442767	Thaps6447.1, Thaps6447.5, Thaps6447.4, Thaps6447.3, Thaps6447.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0169

Most Highly Correlated Transcripts

4108 hypothetical protein 0.9306	21220 KU superfamily 0.8675	12836 EEP superfamily 0.8549	34590 nt_trans superfamily 0.8541	23217 hypothetical protein 0.8539	13448 Sec1 0.8523
23467 hypothetical protein 0.8473	5552 hypothetical protein 0.846	25084 Bestrophin superfamily 0.8457	24019 PolY superfamily 0.8449

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
PI-PLCc_At5g67130_like		Catalytic domain of Arabidopsis thaliana PI-PLC X domain-containing protein At5g67130 and its...	cl14615	276.133	2.84E-84	914 - 1201	specific	176530
PI-PLCc_GDPD_SF superfamily		Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily;...	-	276.133	2.84E-84	914 - 1201	superfamily	246675
Prp19_bind		Splicing factor, Prp19-binding domain; This family represents the C-terminus (approximately 300...	-	133.897	3.41E-34	356 - 600	multi-dom	254008

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_46169	PHATRDRAFT_46169	223500	288881	248351	Cre05.g232950.t1.2	AT4G08580.1	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0005576 -

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