669 Ras_like_GTPase superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
669 chr_10 Ras_like_GTPase superfamily 858165 859896 + Ras_like_GTPase superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7450753 Thaps669.1, Thaps669.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0233

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0291
 0.48

Most Highly Correlated Transcripts

261038

0.8158

263118

ABC_ATPase superfamily
0.8017

7554

hypothetical protein
0.761

25599

hypothetical protein
0.746

2886

hypothetical protein
0.7458

9345

hypothetical protein
0.7396

33153

cyclophilin superfamily
0.7392

11488

hypothetical protein
0.732

25110

hypothetical protein
0.7317

9298

hypothetical protein
0.7204

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Ras_like_GTPase superfamily Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Ras-like GTPase... - 201.133 3.02E-62 159 - 366 superfamily 266525
PTZ00132 GTP-binding nuclear protein Ran; Provisional - 199.148 1.35E-61 165 - 361 multi-dom 240284

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
RNA transport map03013

GO Terms

GO:0005525 GO:0007264 GO:0006886 GO:0015031 -

GO:0005525

GTP binding

Details: 
Interacting selectively and non-covalently with GTP, guanosine triphosphate.
GO Category: 
MF

GO:0007264

small GTPase mediated signal transduction

Details: 
Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals.
GO Category: 
BP

GO:0006886

intracellular protein transport

Details: 
The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
GO Category: 
BP

GO:0015031

protein transport

Details: 
The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO Category: 
BP

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