6798 PRK06476
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
6798 chr_7 PRK06476 521844 523219 - PRK06476

Synonyms

NCBI ID Ensembl Genomes exon ID
7448978 Thaps6798.2, Thaps6798.1, Thaps6798.4, Thaps6798.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0465

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0158
 0.37

Most Highly Correlated Transcripts

bd687

(bd687) NA
0.8827

bd1160

(bd1160) Chloroa_b-bind superfamily
0.8814

bd258

(bd258) HU
0.8766

bd1662

(bd1662) TIGR00367
0.8684

bd719

(bd719) NA
0.8462

25181

hypothetical protein
0.8462

bd1820

(bd1820) Fasciclin
0.8427

bd208

(bd208) DUF3529
0.8418

bd1645

(bd1645) tpt
0.8404

9471

SEC-C superfamily
0.8401

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
F420_oxidored NADP oxidoreductase coenzyme F420-dependent; NADP oxidoreductase coenzyme F420-dependent. cl19126 60.3095 1.27E-11 86 - 190 specific 252177
F420_oxidored superfamily NADP oxidoreductase coenzyme F420-dependent; NADP oxidoreductase coenzyme F420-dependent. - 60.3095 1.27E-11 86 - 190 superfamily 267479
PRK06476 pyrroline-5-carboxylate reductase; Reviewed - 170.197 5.87E-50 84 - 362 multi-dom 235812

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_49658 PHATRDRAFT_49658 191917 255514 111791 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004735 GO:0006561 GO:0004553 GO:0005975 -

GO:0004735

pyrroline-5-carboxylate reductase activity

Details: 
Catalysis of the reaction: L-proline + NADP+ = 1-pyrroline-5-carboxylate + NADPH + H+.
GO Category: 
MF

GO:0006561

proline biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of proline (pyrrolidine-2-carboxylic acid), a chiral, cyclic, nonessential alpha-amino acid found in peptide linkage in proteins.
GO Category: 
BP

GO:0004553

hydrolase activity, hydrolyzing O-glycosyl compounds

Details: 
Catalysis of the hydrolysis of any O-glycosyl bond.
GO Category: 
MF

GO:0005975

carbohydrate metabolic process

Details: 
The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
GO Category: 
BP

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